针对创伤重症患者设计首个脓毒症早期预警数据集
Rare Event Early Detection: A Dataset of Sepsis Onset for Critically Ill Trauma Patients
- 基于MIMIC-III构建标准化创伤后脓毒症数据集
- 提出按临床流程每日评估的罕见事件检测新范式
- 为重症创伤患者脓毒症早筛提供基准和工具
脓毒症是重大公共卫生问题,具有高发病率、高死亡率和高医疗成本。通过早期发现和及时干预可显著改善临床结局。尽管已有公开数据集推动了机器学习在重症监护领域的应用,但现有数据将所有重症患者视为同质群体,忽视了创伤患者因创伤性炎症与器官功能障碍可能与脓毒症临床表现重叠带来的挑战。为此,我们提出需针对性识别创伤后脓毒症,以促进早期检测方法的发展。本文构建了一个公开可用的标准创伤后脓毒症发病数据集,该数据集从MIMIC-III中提取并基于标准化临床事实重新标注与验证。同时,我们依据重症监护室日常临床工作流程,将创伤后脓毒症早期检测建模为每日评估的罕见事件检测问题。通过全面实验建立了通用基准,表明该数据集对推动后续研究至关重要。代码与数据已开源:https://github.com/ML4UWHealth/SepsisOnset_TraumaCohort.git。
原文摘要 · Abstract (English)
Sepsis is a major public health concern due to its high morbidity, mortality, and cost. Its clinical outcome can be substantially improved through early detection and timely intervention. By leveraging publicly available datasets, machine learning (ML) has driven advances in both research and clinical practice. However, existing public datasets consider ICU patients (Intensive Care Unit) as a uniform group and neglect the potential challenges presented by critically ill trauma patients in whom injury-related inflammation and organ dysfunction can overlap with the clinical features of sepsis. We propose that a targeted identification of post-traumatic sepsis is necessary in order to develop methods for early detection. Therefore, we introduce a publicly available standardized post-trauma sepsis onset dataset extracted, relabeled using standardized post-trauma clinical facts, and validated from MIMIC-III. Furthermore, we frame early detection of post-trauma sepsis onset according to clinical workflow in ICUs in a daily basis resulting in a new rare event detection problem. We then establish a general benchmark through comprehensive experiments, which shows the necessity of further advancements using this new dataset. The data code is available at https://github.com/ML4UWHealth/SepsisOnset_TraumaCohort.git.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。