arXiv:2602.08764eess.IVcs.AI2026-02中稿 · publication in the…

精准分割脑部影像外轮廓,尤其适合有轻中度病变的扫描

Efficient Brain Extraction of MRI Scans with Mild to Moderate Neuropathology

  • 基于改进U-Net与符号距离变换损失函数,提升边界一致性
  • 在自建和外部数据集上均达DSC 0.96、ASSD 1.4mm的高精度
  • 对脑沟脑脊液保留好,适合神经退行性疾病研究

颅骨剥离是大脑MRI图像处理中的关键步骤,常用于自动脑结构分割。现有方法在存在神经病变时易失效,且脑部掩码边界不一致。本文提出一种新方法,通过在银标准标注数据上训练改进的U-Net模型,结合基于符号距离变换(SDT)的新型损失函数,鲁棒高效地分割出脑部外表面,包含脑沟脑脊液(CSF),但排除蛛网膜下腔和脑膜全范围。在训练集预留测试集及独立外部数据集上验证,结果表明:在内部测试集上平均Dice相似系数(DSC)为0.964±0.006,平均对称表面距离(ASSD)为1.4mm±0.2mm;外部数据集上DSC为0.958±0.006,ASSD为1.7±0.2mm。性能优于或相当现有最先进方法,尤其在保持脑外表面一致性方面表现突出。方法已开源于GitHub。

原文摘要 · Abstract (English)

Skull stripping magnetic resonance images (MRI) of the human brain is an important process in many image processing techniques, such as automatic segmentation of brain structures. Numerous methods have been developed to perform this task, however, they often fail in the presence of neuropathology and can be inconsistent in defining the boundary of the brain mask. Here, we propose a novel approach to skull strip T1-weighted images in a robust and efficient manner, aiming to consistently segment the outer surface of the brain, including the sulcal cerebrospinal fluid (CSF), while excluding the full extent of the subarachnoid space and meninges. We train a modified version of the U-net on silver-standard ground truth data using a novel loss function based on the signed-distance transform (SDT). We validate our model both qualitatively and quantitatively using held-out data from the training dataset, as well as an independent external dataset. The brain masks used for evaluation partially or fully include the subarachnoid space, which may introduce bias into the comparison; nonetheless, our model demonstrates strong performance on the held-out test data, achieving a consistent mean Dice similarity coefficient (DSC) of 0.964$\pm$0.006 and an average symmetric surface distance (ASSD) of 1.4mm$\pm$0.2mm. Performance on the external dataset is comparable, with a DSC of 0.958$\pm$0.006 and an ASSD of 1.7$\pm$0.2mm. Our method achieves performance comparable to or better than existing state-of-the-art methods for brain extraction, particularly in its highly consistent preservation of the brain's outer surface. The method is publicly available on GitHub.

脑分割MRI处理U-Net医学影像

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