arXiv:2602.09477cs.CV2026-02

用滑片级标签训练病理切片嵌入,提升弱监督学习效果

Weakly Supervised Contrastive Learning for Histopathology Patch Embeddings

  • 基于滑片标签设计对比学习框架,无需实例伪标签
  • 在三个数据集上显著优于自监督对比学习方法
  • 适合缺乏细粒度标注的医学图像分析研究者

数字病理全切片图像(WSI)提供千兆像素级高分辨率图像,对疾病诊断极具价值。然而,由于手动标注大尺寸WSI中特定区域或小块切片耗时费力,训练标签有限成为主要挑战。弱监督多实例学习(MIL)通过仅需滑片级标签提供了一种高效解决方案,每个滑片包含多个切片实例。现有MIL方法通常直接使用预训练图像编码器生成的冻结特征,重点在于特征聚合,但忽略了在MIL场景下对编码器特征表示的学习。本文提出一种新型特征表示学习框架——弱监督对比学习(WeakSupCon),在训练过程中引入滑片级标签信息。该方法不依赖实例级伪标签,却能有效在特征空间中分离不同标签的切片。实验结果表明,在三个数据集上,WeakSupCon生成的图像特征相比自监督对比学习方法,显著提升了下游MIL性能。相关代码已开源。

原文摘要 · Abstract (English)

Digital histopathology whole slide images (WSIs) provide gigapixel-scale high-resolution images that are highly useful for disease diagnosis. However, digital histopathology image analysis faces significant challenges due to the limited training labels, since manually annotating specific regions or small patches cropped from large WSIs requires substantial time and effort. Weakly supervised multiple instance learning (MIL) offers a practical and efficient solution by requiring only bag-level (slide-level) labels, while each bag typically contains multiple instances (patches). Most MIL methods directly use frozen image patch features generated by various image encoders as inputs and primarily focus on feature aggregation. However, feature representation learning for encoder pretraining in MIL settings has largely been neglected. In our work, we propose a novel feature representation learning framework called weakly supervised contrastive learning (WeakSupCon) that incorporates bag-level label information during training. Our method does not rely on instance-level pseudo-labeling, yet it effectively separates patches with different labels in the feature space. Experimental results demonstrate that the image features generated by our WeakSupCon method lead to improved downstream MIL performance compared to self-supervised contrastive learning approaches in three datasets. Our related code is available at github.com/BzhangURU/Paper_WeakSupCon_for_MIL

病理图像弱监督对比学习医学影像

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