用量子退火优化生成模型,让分子设计更像药物。
Molecular Design beyond Training Data with Novel Extended Objective Functionals of Generative AI Models Driven by Quantum Annealing Computer
- 结合量子退火与神经哈希函数,实现连续与离散信号转换。
- 生成分子的类药性超越训练数据,无需额外约束。
- 适合药物研发中追求高质量分子的设计者。
深度生成模型通过随机设计小分子,正成为加速药物发现的新技术。然而,现有分子生成模型生成类药分子的概率较低。为解决此问题,我们提出一种融合D-Wave量子退火计算机的新型优化框架。文中提出的神经哈希函数(NHF)同时充当正则化和二值化方案,实现经典与量子神经网络间连续与离散信号的转换,并用于误差评估(即目标函数)。通过量子退火生成的分子在有效性与类药性方面均优于纯经典模型,且其类药性特征甚至超越训练数据,无须额外约束或条件诱导。结果表明,量子退火结合新型神经网络架构,可扩展特征空间采样能力并有效提取药物设计中的关键特征。
原文摘要 · Abstract (English)
Deep generative modeling to stochastically design small molecules is an emerging technology for accelerating drug discovery and development. However, one major issue in molecular generative models is their lower frequency of drug-like compounds. To resolve this problem, we developed a novel framework for optimization of deep generative models integrated with a D-Wave quantum annealing computer, where our Neural Hash Function (NHF) presented herein is used both as the regularization and binarization schemes simultaneously, of which the latter is for transformation between continuous and discrete signals of the classical and quantum neural networks, respectively, in the error evaluation (i.e., objective) function. The compounds generated via the quantum-annealing generative models exhibited higher quality in both validity and drug-likeness than those generated via the fully-classical models, and was further indicated to exceed even the training data in terms of drug-likeness features, without any restraints and conditions to deliberately induce such an optimization. These results indicated an advantage of quantum annealing to aim at a stochastic generator integrated with our novel neural network architectures, for the extended performance of feature space sampling and extraction of characteristic features in drug design.
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