arXiv:2602.22974cs.CEcs.CV2026-02

无需检测细胞,直接自动计数小样本中的小胶质细胞并估算不确定性。

An automatic counting algorithm for the quantification and uncertainty analysis of the number of microglial cells trainable in small and heterogeneous datasets

  • 跳过细胞检测,用非参数核计数法直接完成计数任务。
  • 在小数据集上仅需一个超参数即可训练,且能处理异构数据。
  • 支持多专家标注融合,并提供预测置信度,适合神经病理研究。

在大鼠腰椎脊髓横切面图像中计数小胶质细胞通常依赖人工标注或现有自动粗略系统,后者仅提供标记区域和强度信息,无法准确统计细胞数量。本文提出一种无需细胞检测的自动核计数方法,针对高分辨率图像中大量噪声和伪影的问题,先进行预处理生成多个滤波图像以实现高效特征提取。该方法为非参数、非线性模型,基本版本仅需一个超参数,可轻松在小样本数据集上训练;同时具备处理丰富异构数据的能力,灵活性强。此外,算法能提供预测不确定性,并直接整合多个专家对同一图像的标注意见。在人工与真实数据集上的实验均取得优异结果,相关Matlab代码已公开。

原文摘要 · Abstract (English)

Counting immunopositive cells on biological tissues generally requires either manual annotation or (when available) automatic rough systems, for scanning signal surface and intensity in whole slide imaging. In this work, we tackle the problem of counting microglial cells in lumbar spinal cord cross-sections of rats by omitting cell detection and focusing only on the counting task. Manual cell counting is, however, a time-consuming task and additionally entails extensive personnel training. The classic automatic color-based methods roughly inform about the total labeled area and intensity (protein quantification) but do not specifically provide information on cell number. Since the images to be analyzed have a high resolution but a huge amount of pixels contain just noise or artifacts, we first perform a pre-processing generating several filtered images {(providing a tailored, efficient feature extraction)}. Then, we design an automatic kernel counter that is a non-parametric and non-linear method. The proposed scheme can be easily trained in small datasets since, in its basic version, it relies only on one hyper-parameter. However, being non-parametric and non-linear, the proposed algorithm is flexible enough to express all the information contained in rich and heterogeneous datasets as well (providing the maximum overfit if required). Furthermore, the proposed kernel counter also provides uncertainty estimation of the given prediction, and can directly tackle the case of receiving several expert opinions over the same image. Different numerical experiments with artificial and real datasets show very promising results. Related Matlab code is also provided.

细胞计数小样本学习不确定性估计生物图像分析

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