arXiv:2603.05693eess.IVcs.AI2026-03

用3D扩散模型修复脑MRI病变,保持时间连续性且提速10倍

Longitudinal Lesion Inpainting in Brain MRI via 3D Region Aware Diffusion

  • 通过多通道条件建模两次就诊的纵向信息,实现跨时间的病变修复
  • LPIPS降低至0.03,时间保真度指数达1.024,接近理想值1.0
  • 区域感知去噪机制提升效率,单体积处理仅需2.53分钟

准确的脑部MRI纵向分析常受病变演变影响,导致自动化流程偏差。尽管深度生成模型在病变修复方面展现出潜力,但多数方法为截面处理,缺乏3D解剖连续性。本文提出一种基于去噪扩散概率模型(DDPM)的伪3D纵向修复框架,利用多通道条件引入不同就诊时间点(t₁, t₂)的纵向上下文,并将区域感知扩散(RAD)扩展至医学领域,聚焦病灶区域修复而不改变周围健康组织。我们在93名患者的纵向脑部MRI数据上评估了该模型,结果表明其显著优于领先基线(FastSurfer-LIT):感知保真度提升,学习感知图像块相似性(LPIPS)从0.07降至0.03,有效消除切片间不连续性;同时,时间保真度指数(TFI)达1.024,接近理想值1.0,大幅缩小与基线1.22的差距。值得注意的是,RAD机制带来显著效率提升,本框架平均单体积处理时间为2.53分钟,约为基线24.30分钟的1/10。通过利用纵向先验与区域特异性去噪,该框架为渐进性神经退行性疾病研究提供了高效可靠的预处理方案。测试所用93例预处理扫描数据集将在论文接受后按需提供,代码亦将在接受后开源。

原文摘要 · Abstract (English)

Accurate longitudinal analysis of brain MRI is often hindered by evolving lesions, which bias automated neuroimaging pipelines. While deep generative models have shown promise in inpainting these lesions, most existing methods operate cross-sectionally or lack 3D anatomical continuity. We present a novel pseudo-3D longitudinal inpainting framework based on Denoising Diffusion Probabilistic Models (DDPM). Our approach utilizes multi-channel conditioning to incorporate longitudinal context from distinct visits (t_1, t_2) and extends Region-Aware Diffusion (RAD) to the medical domain, focusing the generative process on pathological regions without altering surrounding healthy tissue. We evaluated our model against state-of-the-art baselines on longitudinal brain MRI from 93 patients. Our model significantly outperforms the leading baseline (FastSurfer-LIT) in terms of perceptual fidelity, reducing the Learned Perceptual Image Patch Similarity (LPIPS) distance from 0.07 to 0.03 while effectively eliminating inter-slice discontinuities. Furthermore, our model demonstrates high longitudinal stability with a Temporal Fidelity Index of 1.024, closely approaching the ideal value of 1.0 and substantially narrowing the gap compared to LIT's TFI of 1.22. Notably, the RAD mechanism provides a substantial gain in efficiency; our framework achieves an average processing time of 2.53 min per volume, representing approximately 10x speedup over the 24.30 min required by LIT. By leveraging longitudinal priors and region-specific denoising, our framework provides a highly reliable and efficient preprocessing step for the study of progressive neurodegenerative diseases. A derivative dataset consisting of 93 pre-processed scans used for testing will be available upon request after acceptance. Code will be released upon acceptance.

脑影像扩散模型病变修复纵向分析

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