用分割先验提升虚拟多色荧光染色的细胞结构保真度
Segmentation-before-Staining Improves Structural Fidelity in Virtual IHC-to-Multiplex IF Translation
- 引入预训练核分割模型的概率图作为无监督先验条件
- 在两个数据集上显著提升核计数准确率和荧光通道感知质量
- 适合病理图像生成、数字病理分析等临床转化场景
多色免疫荧光(mIF)可同时量化组织中多个生物标志物,但试剂成本高、染色流程复杂且需专用成像设备,限制其在临床中的常规应用。虚拟染色可从常见的明场免疫组化(IHC)合成mIF通道,但现有方法仅优化像素级保真度,未显式约束核形态。在病理学中,核数量、形状或空间排列的微小失真会直接影响增殖指数(如Ki67)等定量终点,误差几百分点即可改变治疗风险分层。本文提出一种无需监督、架构无关的条件策略:将预训练核分割模型生成的连续细胞概率图作为显式输入先验,并加入保持局部强度统计特性的正则项,以维持合成荧光通道的细胞水平异质性。该软先验保留了二值阈值丢失的边界梯度信息,提供更丰富的条件信号,无需任务特异性调参。在Pix2Pix与U-Net/ResNet生成器、确定性回归U-Net及条件扩散模型上,基于两个独立数据集的对照实验均显示核计数保真度与感知质量持续提升。代码将在接受后公开。
原文摘要 · Abstract (English)
Multiplex immunofluorescence (mIF) enables simultaneous single-cell quantification of multiple biomarkers within intact tissue architecture, yet its high reagent cost, multi-round staining protocols, and need for specialized imaging platforms limit routine clinical adoption. Virtual staining can synthesize mIF channels from widely available brightfield immunohistochemistry (IHC), but current translators optimize pixel-level fidelity without explicitly constraining nuclear morphology. In pathology, this gap is clinically consequential: subtle distortions in nuclei count, shape, or spatial arrangement propagate directly to quantification endpoints such as the Ki67 proliferation index, where errors of a few percent can shift treatment-relevant risk categories. This work introduces a supervision-free, architecture-agnostic conditioning strategy that injects a continuous cell probability map from a pretrained nuclei segmentation foundation model as an explicit input prior, together with a variance-preserving regularization term that matches local intensity statistics to maintain cell-level heterogeneity in synthesized fluorescence channels. The soft prior retains gradient-level boundary information lost by binary thresholding, providing a richer conditioning signal without task-specific tuning. Controlled experiments across Pix2Pix with U-Net and ResNet generators, deterministic regression U-Net, and conditional diffusion on two independent datasets demonstrate consistent improvements in nuclei count fidelity and perceptual quality, as the sole modifications. Code will be made publicly available upon acceptance.
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