基于基因型数据的药物重定位框架,提升靶点发现效率。
G2DR: A Genotype-First Framework for Genetics-Informed Target Prioritization and Drug Repurposing
- 从基因型出发,融合表达预测与多源证据进行靶点排序。
- 在偏头痛研究中实现0.775的基因水平ROC-AUC和0.475的PR-AUC。
- 适合遗传学驱动的药物研发,尤其缺乏转录组数据时使用。
人类遗传学为治疗发现提供了潜力路径,但将基因型信号转化为可排序的靶点与药物假设的实用框架仍有限,尤其在缺乏匹配疾病转录组数据时。本文提出G2DR,一种基因型优先的优先级框架,通过遗传预测表达、多方法基因水平测试、通路富集、网络背景、可成药性及多源药物-靶点证据整合来推进。在包含733名英国生物银行参与者的偏头痛案例研究中,利用五折分层交叉验证,对七个转录组加权资源进行表达推断,基于训练与验证数据的可重现性感知发现评分对基因排序,并采用平衡集成评分选择靶点。基于发现的优先级在保留数据上具有0.775的基因水平ROC-AUC和0.475的PR-AUC,同时维持了已知偏头痛生物学的富集。通过Open Targets、DGIdb和ChEMBL将优先基因映射到化合物,获得的药物集相对于全局背景在偏头痛相关化合物上显著富集,但回收更偏好机制关联广泛和非标签用途的药物,而非特定批准疗法。方向性过滤可区分广泛回收药物与机制相容候选物。G2DR是一个模块化遗传信息引导的假设生成框架,非临床可操作推荐系统,所有输出需独立实验、药理及临床验证。
原文摘要 · Abstract (English)
Human genetics offers a promising route to therapeutic discovery, yet practical frameworks translating genotype-derived signal into ranked target and drug hypotheses remain limited, particularly when matched disease transcriptomics are unavailable. Here we present G2DR, a genotype-first prioritization framework propagating inherited variation through genetically predicted expression, multi-method gene-level testing, pathway enrichment, network context, druggability, and multi-source drug--target evidence integration. In a migraine case study with 733 UK Biobank participants under stratified five-fold cross-validation, we imputed expression across seven transcriptome-weight resources and ranked genes using a reproducibility-aware discovery score from training and validation data, followed by a balanced integrated score for target selection. Discovery-based prioritization generalized to held-out data, achieving gene-level ROC-AUC of 0.775 and PR-AUC of 0.475, while retaining enrichment for curated migraine biology. Mapping prioritized genes to compounds via Open Targets, DGIdb, and ChEMBL yielded drug sets enriched for migraine-linked compounds relative to a global background, though recovery favoured broader mechanism-linked and off-label space over migraine-specific approved therapies. Directionality filtering separated broadly recovered compounds from mechanistically compatible candidates. G2DR is a modular framework for genetics-informed hypothesis generation, not a clinically actionable recommendation system. All outputs require independent experimental, pharmacological, and clinical validation.
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