用拼图正则化提升病理切片分类精度
Jigsaw Regularization in Whole-Slide Image Classification
- 用视觉基础模型嵌入捕捉单张切片局部结构
- 结合图神经网络与拼图正则化实现跨切片空间感知
- 在乳腺癌等三类癌症数据集上超越现有注意力模型
计算病理学将染色组织转化为包含数十亿像素的全切片图像(WSIs),其统计分析多采用多实例学习(MIL)进行分类,即通过无标签切片块推断整体切片标签。现有MIL方法通常将切片块视为可交换,忽略了组织图像中丰富的空间与拓扑结构。本文基于近期图结构方法,提出新思路:(1) 使用视觉基础模型嵌入捕捉每张切片块内的局部空间结构;(2) 通过图神经网络结合新颖的拼图正则化,实现跨切片的空间感知。实验表明,该方法在乳腺癌、头颈部癌和结肠癌的基准数据集上,显著优于当前最先进的基于注意力的MIL方法。
原文摘要 · Abstract (English)
Computational pathology involves the digitization of stained tissues into whole-slide images (WSIs) that contain billions of pixels arranged as contiguous patches. Statistical analysis of WSIs largely focuses on classification via multiple instance learning (MIL), in which slide-level labels are inferred from unlabeled patches. Most MIL methods treat patches as exchangeable, overlooking the rich spatial and topological structure that underlies tissue images. This work builds on recent graph-based methods that aim to incorporate spatial awareness into MIL. Our approach is new in two regards: (1) we deploy vision \emph{foundation-model embeddings} to incorporate local spatial structure within each patch, and (2) achieve across-patch spatial awareness using graph neural networks together with a novel {\em jigsaw regularization}. We find that a combination of these two features markedly improves classification over state-of-the-art attention-based MIL approaches on benchmark datasets in breast, head-and-neck, and colon cancer.
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