对比深度学习与统计方法,评估多中心脑影像数据整合效果。
Evaluation of neuroCombat and deep learning harmonization for multi-site magnetic resonance neuroimaging in youth with prenatal alcohol exposure
- 用HACA3深度学习和neuroCombat统计法处理多中心脑影像数据。
- 统计方法在体积度量上更有效减少站点差异,达显著水平(p<0.05)。
- HACA3需配合统计方法才能更好保留生物信号,适合儿科研究者参考。
在常见疾病如产前酒精暴露(PAE)研究中,多中心数据采集可扩大样本量,但不同扫描仪和采集协议引入的异质性会混淆生物相关信号。神经科学家常在图像处理后使用统计方法(如neuroCombat)对区域体积等指标进行分析,以降低站点差异。近年来,基于深度学习的HACA3方法可在量化前直接同步图像信号,但尚未在儿童群体中验证。本研究在7至21岁青少年中,针对三个不同扫描仪采集的对照组与PAE病例,结合MaCRUISE体积度量,评估HACA3与neuroCombat的效果。结果表明,HACA3能定性改善跨站点图像对比度差异,但统计方法在控制站点效应方面更优(经ANCOVA检验,差异显著,p<0.05),且需结合后续统计方法才能实现生物信号的最大保留。
原文摘要 · Abstract (English)
In cases of prevalent diseases and disorders, such as Prenatal Alcohol Exposure (PAE), multi-site data collection allows for increased study samples. However, multi-site studies introduce additional variability through heterogeneous collection materials, such as scanner and acquisition protocols, which confound with biologically relevant signals. Neuroscientists often utilize statistical methods on image-derived metrics, such as volume of regions of interest, after all image processing to minimize site-related variance. HACA3, a deep learning harmonization method, offers an opportunity to harmonize image signals prior to metric quantification; however, HACA3 has not yet been validated in a pediatric cohort. In this work, we investigate HACA3's ability to remove site-related variance and preserve biologically relevant signal compared to a statistical method, neuroCombat, and pair HACA3 processing with neuroCombat to evaluate the efficacy of multiple harmonization methods in a pediatric (age 7 to 21) population across three unique scanners with controls and cases of PAE with downstream MaCRUISE volume metrics. We find that HACA3 qualitatively improves inter-site contrast variations, but statistical methods reduce greater site-related variance within the MaCRUISE volume metrics following an ANCOVA test, and HACA3 relies on follow-up statistical methods to approach maximal biological preservation in this context.
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