用自编码器+分布对齐提升脑转移瘤分割跨机构泛化能力
Improving Generalization of Deep Learning for Brain Metastases Segmentation Across Institutions
- 先用变分自编码器结合最大均值差异对齐不同机构影像特征
- 分割性能在四个中心平均提升11.1%(F1)和7.93%(sDice)
- 无需目标数据标签,适合临床部署的多中心医学影像分析
深度学习在自动脑转移瘤(BM)分割中展现出巨大潜力,但单一机构训练的模型因扫描仪硬件、成像协议和患者人群差异,在其他机构表现不佳。本文提出一种基于变分自编码器与最大均值差异(VAE-MMD)的预处理流程,融合跳跃连接和自注意力机制,并与nnU-Net分割网络结合。在斯坦福、加州大学旧金山分校、乌尔克医学院和北京大学医院四个公开数据库共740例患者上验证,通过领域分类器准确率(从0.91降至0.50)、峰值信噪比(>36 dB)、表面骰率(sDice)、F1/F2分数及95%豪斯多夫距离(HD95)评估。结果表明,该方法使平均F1提升11.1%(0.700→0.778),平均sDice提升7.93%(0.7121→0.7686),平均HD95降低65.5%(11.33→3.91 mm),有效缓解跨机构数据异质性,显著提升分割泛化能力,且无需目标域标签。
原文摘要 · Abstract (English)
Background: Deep learning has demonstrated significant potential for automated brain metastases (BM) segmentation; however, models trained at a singular institution often exhibit suboptimal performance at various sites due to disparities in scanner hardware, imaging protocols, and patient demographics. The goal of this work is to create a domain adaptation framework that will allow for BM segmentation to be used across multiple institutions. Methods: We propose a VAE-MMD preprocessing pipeline that combines variational autoencoders (VAE) with maximum mean discrepancy (MMD) loss, incorporating skip connections and self-attention mechanisms alongside nnU-Net segmentation. The method was tested on 740 patients from four public databases: Stanford, UCSF, UCLM, and PKG, evaluated by domain classifier's accuracy, sensitivity, precision, F1/F2 scores, surface Dice (sDice), and 95th percentile Hausdorff distance (HD95). Results: VAE-MMD reduced domain classifier accuracy from 0.91 to 0.50, indicating successful feature alignment across institutions. Reconstructed volumes attained a PSNR greater than 36 dB, maintaining anatomical accuracy. The combined method raised the mean F1 by 11.1% (0.700 to 0.778), the mean sDice by 7.93% (0.7121 to 0.7686), and reduced the mean HD95 by 65.5% (11.33 to 3.91 mm) across all four centers compared to the baseline nnU-Net. Conclusions: VAE-MMD effectively diminishes cross-institutional data heterogeneity and enhances BM segmentation generalization across volumetric, detection, and boundary-level metrics without necessitating target-domain labels, thereby overcoming a significant obstacle to the clinical implementation of AI-assisted segmentation.
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