用模拟扰动修复法生成染色体异常数据,解决罕见病样本不足问题。
Perturb-and-Restore: Simulation-driven Structural Augmentation Framework for Imbalance Chromosomal Anomaly Detection
- 通过扰动正常染色体并修复生成合成异常样本
- 在24类异常上提升灵敏度8.92%、F1-score 13.79%
- 适合医学图像分析与小样本异常检测研究者
检测结构型染色体异常对遗传病的准确诊断和管理至关重要。然而,临床实践中获取充足的异常数据极为困难且成本高昂,许多异常类型难以收集。导致深度学习方法因异常样本严重不平衡和稀缺而性能显著下降。为此,我们提出一种仿真驱动的结构增强框架Perturb-and-Restore(P&R),有效缓解染色体异常检测中的数据不平衡问题。P&R包含两个核心组件:(1) 结构扰动与重建仿真,通过扰动正常染色体的带状模式并利用重建扩散网络恢复连续染色体内容和边缘,从而无需依赖稀有异常样本;(2) 能量引导的自适应采样,基于能量得分的在线选择策略,动态优先选取高质量合成样本。为评估方法,我们构建了一个包含超过26万张染色体图像的综合性结构异常数据集,其中4,242个异常样本涵盖24个类别。实验结果表明,P&R框架达到当前最优性能,在所有类别上平均灵敏度提升8.92%,精确率提升8.89%,F1-score提升13.79%。
原文摘要 · Abstract (English)
Detecting structural chromosomal abnormalities is crucial for accurate diagnosis and management of genetic disorders. However, collecting sufficient structural abnormality data is extremely challenging and costly in clinical practice, and not all abnormal types can be readily collected. As a result, deep learning approaches face significant performance degradation due to the severe imbalance and scarcity of abnormal chromosome data. To address this challenge, we propose a Perturb-and-Restore (P&R), a simulation-driven structural augmentation framework that effectively alleviates data imbalance in chromosome anomaly detection. The P&R framework comprises two key components: (1) Structure Perturbation and Restoration Simulation, which generates synthetic abnormal chromosomes by perturbing chromosomal banding patterns of normal chromosomes followed by a restoration diffusion network that reconstructs continuous chromosome content and edges, thus eliminating reliance on rare abnormal samples; and (2) Energy-guided Adaptive Sampling, an energy score-based online selection strategy that dynamically prioritizes high-quality synthetic samples by referencing the energy distribution of real samples. To evaluate our method, we construct a comprehensive structural anomaly dataset consisting of over 260,000 chromosome images, including 4,242 abnormal samples spanning 24 categories. Experimental results demonstrate that the P&R framework achieves state-of-the-art (SOTA) performance, surpassing existing methods with an average improvement of 8.92% in sensitivity, 8.89% in precision, and 13.79% in F1-score across all categories.
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