arXiv:2604.11679cs.CV2026-04被引 3

用临床真实MRI数据训练脑部影像基础模型,验证自监督学习在实际场景中的泛化能力。

Towards Brain MRI Foundation Models for the Clinic: Findings from the FOMO25 Challenge

论文配图:Towards Brain MRI Foundation Models for the Clinic: Findings from the FOMO25 Challenge
图 1 · 摘自论文原文
  • 基于6万例临床MRI数据自监督预训练,提升模型对真实医疗数据的适应性。
  • 跨域训练模型表现优于领域内监督训练,小模型也能达到高性能。
  • 不同任务需匹配不同预训练目标,模型规模扩大未必带来性能提升。

临床脑部MRI自动化分析面临数据异质性强、标注成本高的挑战。自监督学习可通过海量未标注临床数据训练鲁棒的基础模型,在少量标注下实现跨域适配。然而,现有脑部MRI基础模型受限于预训练数据量小且评测依赖高质量研究数据。为此,我们在MICCAI 2025组织了FOMO25挑战赛,提供FOMO60K大规模预训练数据集,并在来自真实临床工作流的少样本与跨域设置中评估模型。任务涵盖梗死分类、脑膜瘤分割和脑龄回归,分为基于FOMO60K的模型赛道和任意数据的开放赛道。共19个来自16个团队的基础模型通过标准化容器化流程评估。结果表明:(a) 自监督预训练显著提升临床数据下的泛化能力,跨域训练的最优模型超越领域内监督基线;(b) 无单一预训练目标适用于所有任务:MAE利于分割,混合重建-对比目标利于分类;(c) 小模型已具备强性能,模型规模与训练时长增加并未带来稳定收益。

原文摘要 · Abstract (English)

Clinical deployment of automated brain MRI analysis faces a fundamental challenge: clinical data is heterogeneous and noisy, and high-quality labels are prohibitively costly to obtain. Self-supervised learning (SSL) can address this by leveraging the vast amounts of unlabeled data produced in clinical workflows to train robust \textit{foundation models} that adapt out-of-domain with minimal supervision. However, the development of foundation models for brain MRI has been limited by small pretraining datasets and in-domain benchmarking focused on high-quality, research-grade data. To address this gap, we organized the FOMO25 challenge as a satellite event at MICCAI 2025. FOMO25 provided participants with a large pretraining dataset, FOMO60K, and evaluated models on data sourced directly from clinical workflows in few-shot and out-of-domain settings. Tasks covered infarct classification, meningioma segmentation, and brain age regression, and considered both models trained on FOMO60K (method track) and any data (open track). Nineteen foundation models from sixteen teams were evaluated using a standardized containerized pipeline. Results show that (a) self-supervised pretraining improves generalization on clinical data under domain shift, with the strongest models trained \textit{out-of-domain} surpassing supervised baselines trained \textit{in-domain}. (b) No single pretraining objective benefits all tasks: MAE favors segmentation, hybrid reconstruction-contrastive objectives favor classification, and (c) strong performance was achieved by small pretrained models, and improvements from scaling model size and training duration did not yield reliable benefits.

脑部MRI自监督学习基础模型临床应用

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