arXiv:2604.16205cond-mat.mtrl-scics.AI2026-04

用AI自动完成XANES模拟,减少人工错误,提升科研效率。

ChemGraph-XANES: An Agentic Framework for XANES Simulation and Curation

论文配图:ChemGraph-XANES: An Agentic Framework for XANES Simulation and Curation
图 1 · 摘自论文原文
  • 基于大模型的智能代理框架,自动获取参数并生成计算输入
  • 10次化学成分请求全部成功完成,9次文档检索任务也成功执行
  • 适合材料与化学领域研究者快速生成结构相关的光谱数据集

计算X射线吸收近边结构(XANES)广泛用于解析局部配位环境、氧化态和电子结构,但大规模计算常受限于流程复杂性。我们提出ChemGraph-XANES,一个基于大语言模型(LLM)的智能代理框架,结合文档驱动的参数检索(RAG)、模式约束的工具执行、确定性FDMNES输入生成、Parsl支持的任务执行以及溯源友好的数据归档。脚本与自然语言接口共享同一科学后端,实现结构处理、参数化、执行、谱图提取及可选后处理。评估三种工作流模式:文档驱动参数传播、结构文件执行和化学级请求的组成执行。重复测试中,10/10次成分请求、10/10次结构文件执行、9/10次文档检索RAG任务成功完成。所有RAG运行中,能量网格参数均正确从FDMNES手册中提取,唯一失败发生在多结构处理下游。在另一并行演示中,框架从Materials Project检索21个TiO₂结构,并为每个结构提交一个FDMNES计算,全部成功,且Parsl将任务分发至用户配置的工作池。结果表明,ChemGraph-XANES提供了一个受控且可复现的计算光谱编排层,支持一致执行代表性任务、文档关联参数选择及结构相关XANES数据集的并行生成。

原文摘要 · Abstract (English)

Computational X-ray absorption near-edge structure (XANES) is widely used to interpret local coordination environments, oxidation states, and electronic structure, but large computational campaigns are often limited by workflow complexity. We present ChemGraph-XANES, a large language model (LLM)-based agentic framework that combines documentation-grounded parameter retrieval via retrieval-augmented generation (RAG), schema-constrained tool execution, deterministic FDMNES input generation, Parsl-backed execution, and provenance-aware data curation. Scripted and natural-language interfaces share a common scientific backend for structure handling, parameterization, execution, spectral extraction, and optional post-processing. We evaluate three workflow modes: documentation-grounded parameter propagation, structure-file-based execution, and composition-based execution from a chemistry-level request. Repeated trials yielded end-to-end completion in 10/10 composition-based runs, 10/10 structure-file-based runs, and 9/10 documentation-grounded RAG runs. In every RAG run, the energy-grid specification retrieved from the FDMNES manual was correctly propagated, with the single end-to-end failure occurring downstream during multi-structure handling. In a separate task-parallel demonstration, the framework retrieved 21 TiO$_2$ structures from the Materials Project and submitted one FDMNES calculation per structure. All calculations completed successfully, with Parsl distributing the independent tasks across the user-configured worker pool. Together, these results show that ChemGraph-XANES provides a constrained and reproducible orchestration layer for computational spectroscopy, supporting consistent execution of representative tasks, documentation-linked parameter selection, and task-parallel generation of structure-linked XANES collections.

XANES模拟智能代理材料计算光谱分析

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