arXiv:2604.23465cs.LG2026-04

用机器学习构建虚拟对照组,评估生物药治疗克罗恩病的疗效差异。

Machine learning models for estimating counterfactuals in a single-arm inflammatory bowel disease study

  • 用五种机器学习模型基于英夫利昔单抗患者数据,预测阿达木单抗患者的1年无激素缓解情况。
  • 梯度提升模型预测结果与倾向评分匹配法一致,显示两种药物疗效无统计差异。
  • 该方法可替代昂贵耗时的对照组招募,适合罕见病或伦理受限的临床研究。

单臂试验通过减少对照组患者招募数量加快研究进程,但需替代性对照组来估计治疗效果。一种方法是利用外部对照数据训练机器学习(ML)模型,构建虚拟对照臂,预测治疗臂患者的反事实结局。本研究旨在开发并评估基于ML的反事实结局模型,利用接受英夫利昔单抗(IFX)治疗的患者数据,预测接受阿达木单抗(ADA)治疗的儿科克罗恩病患者在1年内实现无激素临床缓解(SFCR)及超敏反应蛋白缓解联合无激素临床缓解(CRP-SFCR)的概率,并与使用倾向评分匹配法对比外部对照的结果进行比较。采用五种机器学习模型在已观察的IFX队列数据上训练反事实模型,用于预测ADA队列患者的反事实结局。结果显示,梯度提升机(LGBM)的比值比最接近倾向评分匹配参考结果,所有95%置信区间均与参考研究结论一致:接受ADA或IFX治疗的患者在主要和次要终点上无统计学差异。本研究支持虚拟对照组作为昂贵、耗时或不道德的患者招募的可行且有效替代方案。所开发的梯度提升预测模型可作为预训练模型,在未来研究中生成IFX反事实预测,但需经外部验证和可迁移性评估。

原文摘要 · Abstract (English)

Single-arm trials accelerate study timelines by reducing the number of patients that must be recruited for a concurrent control group. However, these designs require an alternative comparator to estimate treatment effects. One approach is to construct a virtual control arm using a machine learning (ML) model trained on external control data to predict the counterfactual outcomes of the treatment arm. Our aim in this study was to leverage virtual controls by developing and evaluating ML-based counterfactual outcome models trained on IFX-treated patients to predict 1-year steroid-free clinical remission (SFCR ) and a composite of C-reactive protein remission plus steroid-free clinical remission (CRP-SFCR) for ADA-treated pediatric Crohn's disease patients, and to compare the resulting IFX-versus-ADA treatment effect estimates with those obtained using propensity score matching to external controls. Five ML models were used to train counterfactual models on the observed IFX cohort data. The resulting models were used to predict the counterfactual outcomes for the ADA arm patients. LGBM yields the best OR closest to the propensity score matched reference, and all 95% CI results align with the conclusion from the reference study that no statistical difference in the primary and secondary outcomes has been observed between the patients treated with ADA or IFX. Our study supports virtual controls as a viable and effective substitute for expensive, lengthy or unethical patient recruitment in an inflammatory bowel disease (IBD) trial. The developed gradient boosted prediction model can be used as a pretrained model to generate IFX counterfactual predictions in future studies, pending external validation and assessment of transportability.

机器学习虚拟对照克罗恩病反事实预测

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