TSAssistant用多智能体系统自动生成靶点安全评估报告,提升可复现性与专家协作效率。
TSAssistant: A Human-in-the-Loop Agentic Framework for Automated Target Safety Assessment

- 分域智能体协同工作,各司其职并引用可靠数据源
- 报告生成可复现性强,与人工参考结果高度一致
- 支持专家交互式修订,适合医药研发中的安全评估场景
靶点安全评估(TSA)需整合基因组、转录组、靶点同源性、药理学及临床数据,以评估治疗靶点的安全风险。该过程耗时且依赖专家,难以规模化与复现。本文提出TSAssistant,一种人机协同的多智能体框架,将报告生成分解为多个专业化子任务:研究子代理分别针对单一TSA领域进行数据检索与引用,合成子代理则跨领域整合发现。子代理通过标准化工具接口从结构化生物医学资源中检索并合成证据,生成可独立引用、有据可查的段落。其行为由分层指令架构驱动,将协调逻辑与领域知识、用户意图分离。为强化约束,程序执行钩子与持久化记忆存储施加硬性规则,同时交互式优化循环允许专家在完整对话上下文中审查与修改各部分。我们不以整体对比衡量质量,而是分解为可复现性、证据基础性、任务级准确性和专家可控性四项指标,结果显示高可复现性与强证据支撑,与人工基准达成显著一致,且专家修正带来净正向改进。
原文摘要 · Abstract (English)
Target Safety Assessment (TSA) requires systematic integration of genetic, transcriptomic, target homology, pharmacological, and clinical data to evaluate potential safety liabilities of therapeutic targets. This process is labor-intensive and expert-dependent, posing challenges in scalability and reproducibility. We present TSAssistant, a human-in-the-loop multi-agent framework that decomposes TSA report generation into a workflow of specialized subagents: Research Subagents that each ground and cite a single TSA domain, and Synthesis Subagents that integrate findings across domains. Subagents retrieve and synthesize evidence from curated biomedical sources through standardized tool interfaces and produce individually citable, evidence-grounded sections, with behavior shaped by a hierarchical instruction architecture that separates coordination logic from domain expertise and user intent. To complement these soft constraints, programmatic execution hooks and persistent memory stores enforce hard constraints across the workflow, while an interactive refinement loop allows experts to review and revise individual sections with full conversational context preserved across iterations. Rather than a single holistic comparison, we decompose report quality into reproducibility, evidential grounding, task-level accuracy, and controllability under expert oversight, finding high reproducibility and grounding, substantial agreement with the human reference, and net-positive expert-driven refinement.
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