arXiv:2605.06530cs.AI2026-05

构建首个真实场景下的传染病时空预测基准,揭示现有模型普遍表现不佳。

SpatialEpiBench: Benchmarking Spatial Information and Epidemic Priors in Forecasting

论文配图:SpatialEpiBench: Benchmarking Spatial Information and Epidemic Priors in Forecasting
图 1 · 摘自论文原文
  • 设计11个数据集的滚动评估框架,模拟真实疫情预测流程。
  • 多数模型在1天至1个月预测中均弱于简单历史值基线。
  • 发现模型难捕捉爆发前兆、抗噪能力差且地理邻接作用有限。

准确的传染病预测对公共卫生响应、资源调配和疫情干预至关重要,但受限于数据稀疏、噪声大且高度非平稳的问题。由于疫情在相互关联的区域间传播,时空方法天然适合提升预测性能。尽管空间信息受关注,却缺乏标准化评估基准,现有评测多采用简单的时序划分,无法反映实时预测实际。本文提出SpatialEpiBench,一个面向真实公共卫生场景的时空传染病预测挑战性基准。该基准包含11个流行病数据集,采用标准化滚动评估与疫情特异性指标。我们评估了融合邻接关系的预测模型及广泛使用的流行病先验知识以适配通用模型,但发现多数方法在1天到1个月的预测范围内仍低于简单的历史值基线,即使在疫情爆发期也如此。我们识别出三大失败模式:(1)难以提前预判疫情爆发;(2)对稀疏和噪声数据处理能力差;(3)常见地理邻接关系对流行病学空间信息贡献有限。相关数据、代码与使用说明已开源:https://github.com/Rachel-Lyu/SpatialEpiBench,助力开发可操作的疫情预测模型。

原文摘要 · Abstract (English)

Accurate epidemic forecasting is crucial for public health response, resource allocation, and outbreak intervention, but remains difficult with sparse, noisy, and highly non-stationary data. Because epidemics unfold across interacting regions, spatiotemporal methods are natural candidates for improving forecasts. Despite growing interest in spatial information, no standardized benchmark exists, and current evaluations often use simple chronological train-test splits that do not reflect real-time forecasting practice. We address this gap with SpatialEpiBench, a challenging benchmark for spatiotemporal epidemic forecasting in realistic public-health settings. SpatialEpiBench includes 11 epidemic datasets with standardized rolling evaluations and outbreak-specific metrics. We evaluate adjacency-informed forecasting models with widely used epidemic priors that adapt general models to epidemiology, but find that most methods underperform a simple last-value baseline from 1 day to 1 month ahead, even during outbreaks and with these priors. We identify three major failure modes: (1) poor outbreak anticipation, (2) difficulty handling sparsity and noise, and (3) limited utility of common geographic adjacency for epidemiological spatial information. We release benchmark data, code, and instructions at https://github.com/Rachel-Lyu/SpatialEpiBench to support development of operationally useful epidemic forecasting models.

传染病预测时空建模基准测试

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