用计算机视觉自动分析水下视频,实现鱼类群落高频量化监测
Automated high-frequency quantification of fish communities and biomass using computer vision

- 结合深度学习与3D重建,从水下视频中自动识别鱼种并追踪数量
- 20天内每小时观测,发现鱼类丰富度、数量和生物量的动态变化
- 非侵入式连续监测,适合长期生态研究与物种动态分析
量化鱼类群落结构对理解生物多样性和生态系统响应至关重要,但现有调查方法难以提供高频、定量的观测。传统方法如捕捞采样、水下视觉普查和环境DNA宏条形码,或需大量人力,或无法可靠估计丰度与生物量。本文开发了一套基于计算机视觉的自动化框架,利用自研双目相机系统获取的水下视频,融合深度学习鱼类识别、多目标跟踪与三维重建技术,实现物种级丰度与生物量估算。在为期20天、每小时白天观测的珊瑚礁鱼类群落上应用该方法,揭示了物种组成变化带来的物种丰富度、丰度和生物量的动态波动。通过与视觉普查和环境DNA调查结果对比,表明本方法能为持续观测的物种提供互补优势,具备非侵入性、连续性和定量性的特点。该方法为长期监测提供了可扩展基础,显著提升了对鱼类群落细粒度时间动态的解析能力。
原文摘要 · Abstract (English)
Quantifying fish community structure is essential for understanding biodiversity and ecosystem responses in a changing environment, yet existing survey methods provide limited high-frequency, quantitative observations. Conventional approaches, including catch-based methods, underwater visual censuses, and environmental DNA metabarcoding, either require intensive labor or lack reliable estimates of abundance and biomass. Here, we develop an automated framework for quantifying fish communities from underwater video using computer vision. Using videos acquired with a custom-made stereo camera system, the framework integrates deep learning-based fish identification, multi-object tracking, and 3D reconstruction to estimate species-level abundance and biomass. We applied the approach to a reef fish community over a 20-day period with hourly daytime observations, revealing dynamic fluctuations in species richness, abundance, and biomass associated with changes in species composition. By comparing fish communities estimated from visual census and environmental DNA surveys, we demonstrate that our method provides complementary strengths for continuous, non-invasive, and quantitative monitoring of consistently observed species. This approach provides a scalable foundation for long-term monitoring and advances the capacity to resolve fine-scale temporal dynamics in fish communities.
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