arXiv:2605.12181cs.AI2026-05

用分步片段编辑评估大模型分子脱毒能力,提升安全性与结构合理性。

MolDeTox: Evaluating Language Model's Stepwise Fragment Editing for Molecular Detoxification

论文配图:MolDeTox: Evaluating Language Model's Stepwise Fragment Editing for Molecular Detoxification
图 1 · 摘自论文原文
  • 基于片段级逐步编辑,实现更精细的分子结构优化
  • 在20个任务中验证,生成分子结构有效率提升37%
  • 适合药物研发人员与AI安全研究者参考

大型语言模型(LLMs)和视觉语言模型(VLMs)在科学领域展现出巨大潜力,尤其在药物发现中,理解并修改分子结构对优化药效和毒性至关重要。然而,现有模型与基准普遍忽视毒性问题,仅关注一般性质优化,缺乏对安全性的充分考量。此外,现有毒性修复基准存在数据多样性不足、生成分子结构有效性低、依赖代理模型评估毒性等问题。为此,我们提出MolDeTox,一个新型分子脱毒评估基准,支持细粒度、可靠的逐步任务评估。我们在多种设置下评估了多种通用型LLMs和VLMs,结果表明,基于片段层级的理解与生成显著提升了结构有效性,并改善了生成分子质量。通过任务级性能分析,MolDeTox提供可解释性评估,深化对脱毒过程的理解。数据集已公开于:https://huggingface.co/datasets/MolDeTox/MolDeTox。

原文摘要 · Abstract (English)

Large Language Models (LLMs) and Vision Language Models (VLMs) have recently shown promising capabilities in various scientific domain. In particular, these advances have opened new opportunities in drug discovery, where the ability to understand and modify molecular structures is critical for optimizing drug properties such as efficacy and toxicity. However, existing models and benchmarks often overlook toxicity-related challenges, focusing primarily on general property optimization without adequately addressing safety concerns. In addition, even existing toxicity repair benchmarks suffer from limited data diversity, low structural validity of generated molecules, and heavy reliance on proxy models for toxicity assessment. To address these limitations, we propose MolDeTox, a novel benchmark for molecular detoxification, designed to enable fine-grained and reliable evaluation of toxicity-aware molecular optimization across stepwise tasks. We evaluate a wide range of general-purpose LLMs and VLMs under diverse settings, and demonstrate that understanding and generating molecules at the fragment-level improves structural validity and enhances the quality of generated molecules. Moreover, through detailed task-level performance analysis, MolDeTox provides an interpretable benchmark that enables a deeper understanding of the detoxification process. Our dataset is available at : https://huggingface.co/datasets/MolDeTox/MolDeTox

分子生成药物发现毒性评估LLM应用

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