用拓扑方法捕捉聚合物多体相互作用,提升性质预测与设计能力
Periodic Topological Deep Learning for Polymer Design and Discovery

- 基于周期性维托里斯-里普斯复形建模聚合物长程拓扑结构
- 酯变酰胺使玻璃化转变温度提升约55℃,α-甲基化提升约14℃
- 可指导新聚合物设计,实验验证了模型预测的准确性
聚合物在能源、医疗和材料科学中应用广泛,但其巨大的化学空间使得系统发现极具挑战。现有机器学习方法通常将聚合物表示为单一重复单元的分子图,忽略了聚合物链的周期性及超越成对键的多体相互作用。本文提出周期性拓扑深度学习(Periodic-TDL),基于周期性维托里斯-里普斯复形捕捉跨多个尺度的多体相互作用,并采用分层单纯形消息传递编码器(HSMP)将长程相互作用信息传递至共价键,生成富含高阶拓扑特征的表征。Periodic-TDL 在电子、光学、物理和热学性质预测任务中均优于所有先进模型。我们定量验证了酯到酰胺替换和α-甲基化对热稳定性的增强效果:基于48,208个结构的计算合成数据集,酯变酰胺使玻璃化转变温度(Tg)平均提升约55℃,α-甲基化提升约14℃。通过模型分析六组新型聚合物对(含三例新合成且文献未报道的样品),实验数据成功验证了预测趋势。结果表明,Periodic-TDL 不仅提升预测性能,更能捕捉功能基团修饰的物理本质。
原文摘要 · Abstract (English)
Polymers underpin applications across energy, healthcare, and materials science, yet their vast chemical space makes systematic discovery challenging. Most machine learning approaches represent polymers as molecular graphs of a single repeating unit, thereby missing both the periodicity of polymer chains and many-body interactions beyond pairwise bonds. We introduce Periodic-TDL, a deep learning framework built on periodic Vietoris-Rips complexes that capture many-body interactions across multiple spatial scales, followed by a hierarchical simplicial message-passing (HSMP) encoder that propagates information from long-range interactions to covalent bonds, yielding representations enriched by higher-order topological features. Periodic-TDL outperforms all state-of-the-art models across polymer property prediction tasks spanning electronic, optical, physical, and thermal targets. Furthermore, we quantitatively validate how ester-to-amide substitution and $α$-methylation enhance thermal stability. Using a computationally synthesized dataset of 48,208 structures-generated via systematic substitution of acrylate and acrylamide polymers-we observed a mean $T_g$ increase of $\sim 55^\circ$C for ester-to-amide substitutions and $\sim 14^\circ$C for backbone $α$-methylation across matched polymer pairs. To verify these predicted trends, we use our Periodic-TDL model to analyze six novel polymer pairs from independent experimental measurements, including three newly synthesized polymers previously unreported in the literature. The experimental data successfully confirmed the model's predictions. Ultimately, these findings demonstrate that Periodic-TDL captures the underlying physical effects of specific functional group modifications, rather than merely optimizing predictive performance on benchmark datasets.
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