arXiv:2606.00370cs.HCcs.AI2026-06

用对话式AI自动生成基因组多视图交互可视化,降低专业门槛。

Agentic Authoring of Interactive Multiview Visualizations in Genomics

论文配图:Agentic Authoring of Interactive Multiview Visualizations in Genomics
图 1 · 摘自论文原文
  • 基于LLM和代理架构,通过对话逐步生成基因组可视化
  • 在159个案例中,代理迭代使可视化质量显著提升
  • 适合无编程基础的生物科研人员快速构建复杂图表

基因组数据多样、科学问题复杂,通常需要高度定制化的可视化。现有工具或难以定制,或需大量学习成本,且多数用户缺乏可视化设计经验。本文探索将大语言模型与代理系统结合,用于生成基因组领域的多视图交互可视化。研究首先识别出8个可视化质量维度,评估了六种方案(直接生成、固定流程及四种代理配置)在159个案例中的表现,涵盖三类查询模糊性与复杂度。所有方案均以Gosling可视化语法作为结构化输出。结果表明,代理迭代显著优于基线,但更复杂的代理架构未带来额外收益。研究为领域特定可视化生成系统的设计提供了重要启示。补充材料见https://osf.io/uqe83。

原文摘要 · Abstract (English)

Diverse genomics data, scientific questions, and analysis tasks typically demand highly specialized visualizations. Therefore, users often must customize or author new ones tailored to their data. Existing tools are usually either limited in customization or require substantial learning or programming, and even expressive tools assume visualization expertise many users lack. Agentic and large language model (LLM) approaches are increasingly applied to complex scientific tasks, including visualization. Natural-language conversational interfaces offer a promising path to democratizing the authoring of complex visualizations. In the context of genomics, these approaches face additional challenges: genomics visualizations typically integrate heterogeneous data types and are composed of multiple linked interactive views. These challenges motivate more structured LLM-based schemes. We first characterize where vanilla LLM generation succeeds and fails for genomics visualization, identifying eight quality dimensions. We then compare six schemes--direct generation, a fixed pipeline, and four agentic configurations varying in the number of specialist agents and the presence of a reviewer--across 159 cases spanning three levels of query ambiguity and specification complexity. All schemes use the Gosling visualization grammar as structured output. Agentic iteration substantially improves perceived quality over both baselines, while more complex agent architectures yield no additional benefit. We discuss implications for designing agentic systems for domain-specific visualization authoring. All supplemental materials are available at https://osf.io/uqe83.

基因组可视化对话式AI代理系统

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