用流形扩散模型高效生成过渡金属配合物的精确三维结构。
Manifold Diffusion for Structure Generation of Transition Metal Complexes

- 在配位角、扭转和旋转自由度上设计流形扩散过程。
- 仅需少量推理步骤即可生成高精度配位环境。
- 适合催化剂与药物分子的结构设计研究者。
过渡金属配合物在催化、药物设计和材料科学中至关重要,其性质高度依赖于三维几何结构。然而,过渡金属的电子多样性与非常规键合环境给结构生成带来重大挑战。本文提出TMCgen,一种基于流形扩散的机器学习模型,可高效准确地生成过渡金属配合物的几何结构。通过在金属-配体配位角上定义扩散过程,并结合配体的扭转与旋转扩散,TMCgen聚焦于配合物的关键几何自由度。该模型在多种实验获取的生物无机与有机金属配合物数据集上表现优异,仅需少量推理步骤即可实现高效生成。结果表明,基于流形的生成建模具有数据高效性潜力,为属性条件下的过渡金属配合物设计提供了新路径。
原文摘要 · Abstract (English)
Transition metal complexes are central to catalysis, drug design, and materials science, with relevant properties strongly sensitive to their three-dimensional geometry. However, the electronic diversity and unconventional bonding environments of transition metal complexes pose a major challenge for accurate structure generation. In this work, we introduce TMCgen, a manifold diffusion machine learning model that efficiently and accurately generates geometries of transition metal complexes. By formulating the diffusion process over the metal-ligand coordination angles, combined with torsional and rotational diffusion of the ligands, TMCgen focuses on the key geometric degrees of freedom of transition metal complexes. TMCgen shows strong performance in generating accurate coordination environments on a diverse set of experimentally derived bioinorganic and organometallic complexes while requiring only few inference steps, enabling efficient generation. Our results demonstrate the potential of manifold-based generative modeling for data-efficient geometry generation, paving the way for property-conditioned design of transition metal complexes.
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