揭示大模型对齐后内部结构如何变化，发现几何变化有选择性且集中在特定层。

Preference alignment has substantially improved the observable behavior of large language models, yet it remains unclear what alignment changes internally. Aligned systems still fail under jailbreaks, prompt injection, and retrieval-time corruption, suggesting behavior-level evaluation alone is incomplete. Post-training should leave measurable traces in internal computation. We ask: when an instruction-tuned (IT) model becomes a preference-aligned (PA) model, what geometric structure changes, where do those changes concentrate, and how selectively do they vary across concepts, prompts, and model families? We introduce MENTIS, a geometry-first framework for measuring alignment-induced internal reorganization in paired checkpoints. MENTIS compares IT and PA models using a primary layerwise covariance-based torsion norm (T1), a secondary spectral torsion diagnostic (T2), and an Energy-Radiance-Activation measure (ERA) for depth localization. Across four 7-8B model pairs on LITMUS, our study reveals that alignment-induced change is selective rather than uniform: normative concepts exhibit larger torsion shifts than factual concepts on average; torsion is negatively correlated with contextual entropy; and peak effects localize to architecture-specific mid-to-late layers. The same pattern appears across word-level, prompt-level, and model-level analyses. These results suggest preference alignment leaves structured, depth-localized geometric signatures in internal computation beyond what behavior-level evaluation alone can reveal.