用非线性表示学习提升高维中介分析精度
MediEncoder: Nonlinear Representation Learning for High-Dimensional Causal Mediation Analysis

- 设计耦合编码器-解码器架构,联合学习协变量与中介变量的低维表示
- 在阿尔茨海默病数据上显著优于传统降维方法,估计误差更低
- 适合处理高维生物医学数据中的非线性结构依赖关系
因果中介分析将处理效应分解为通过中介变量的间接路径和不通过中介的直接路径。现代生物医学研究常涉及高维协变量和中介变量,这些变量是低维潜在生物过程的噪声代理。现有方法通常依赖稀疏性、线性因子模型或忽略变量间关联,当测量存在非线性且协变量与中介因子具有结构性依赖时,限制明显。本文提出MediEncoder,一种用于非线性高维中介分析的表示学习框架。MediEncoder采用耦合编码器-解码器结构,通过交叉因子网络将治疗与协变量表示连接至中介表示,联合学习低维表示。随后使用交叉拟合的高效影响函数估计自然直接效应与间接效应。该估计器具备多重稳健性,在合适正则条件下渐近正态。模拟结果显示,MediEncoder在估计精度上优于对比方法;在阿尔茨海默病神经影像计划(ADNI)数据上的应用也证实了其在高维生物医学因果中介分析中的实用性。
原文摘要 · Abstract (English)
Causal mediation analysis decomposes a treatment effect into indirect pathways through mediators and direct pathways not operating through them. Modern biomedical studies often involve high-dimensional covariates and mediators that are noisy proxies for lower-dimensional latent biological processes. Existing methods typically rely on sparsity, linear factor models, or ignore the connection among variables in the learned representations, which can be restrictive when measurements are nonlinear and covariate and mediator factors are structurally dependent. We propose MediEncoder, a representation-learning framework for nonlinear high-dimensional mediation analysis. MediEncoder jointly learns low-dimensional covariate and mediator representations using a coupled encoder-decoder architecture with a cross-factor network that links treatment and covariate representations to mediator representations. The learned features are then used in a cross-fitted efficient influence function-based estimator of natural direct and indirect effects. The resulting estimator is multiply robust and asymptotically normal under suitable regularity conditions. Simulations show that MediEncoder improves estimation accuracy over competing dimension-reduction approaches, and an application to Alzheimer's Disease Neuroimaging Initiative data illustrates its utility in high-dimensional biomedical causal mediation analysis.
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