用实验NMR数据快速准确推断分子结构,解决化学家长期难题。
Inverse-IMPRESSION: A Graph-based Platform for Molecular Structure Elucidation from Experimental NMR Spectroscopic Properties
- 基于图神经网络,分三阶段从NMR数据重建原子连接
- 模拟数据下77.8%的分子(≤30个重原子)正确解析
- 首次实现基于真实NMR数据的自动化分子结构推断
本文提出基于反向图变换网络IMPRESSION-G2的逆向-IMPRESSION平台,可直接从实验核磁共振(NMR)谱学信息中快速准确地重构分子键合关系。该平台包含三个相互关联的阶段:一次性模型预测原子间键连;结构修正阶段通过移除不确定键并迭代重分配来优化预测结果;噪声增强的多轮预测生成候选结构集合,并排序选出最优结构。整合¹H和¹³C NMR数据,包括COSY、HSQC和HMBC等二维实验数据,该平台在模拟数据下对含最多30个重原子(H, C, N, O, F)的分子正确识别率达77.8%;在真实实验数据上,19个分子中有10个被正确解析(53%)。所解结构分子量最高达480 Da,涵盖合成与天然产物中常见的复杂结构,为化学家带来巨大挑战。逆向-IMPRESSION框架首次实现了基于图神经网络在真实实验数据上的自动分子结构解析。
原文摘要 · Abstract (English)
Here, we present a platform built on our inverted Graph Transformer Network, IMPRESSION-G2, which can accurately and rapidly reconstruct molecular bonding directly from experimental nuclear magnetic resonance (NMR) spectroscopic information. It comprises three interconnected stages: a one-shot model that predicts bond connectivity between atoms; a structure-correction stage that corrects the predicted structures by removing uncertain bonds and iteratively reassigning them; noise-augmented multi-shot prediction, generating an ensemble of candidate structures, which are ranked to identify the best-fit structure. By integrating a range of $^{1}$H and $^{13}$C NMR data, including two-dimensional (2D) experiments such as COSY, HSQC, and HMBC, the inverse-IMPRESSION platform correctly identifies the structures of 77.8% of molecules with up to 30 heavy atoms (H, C, N, O and F) using simulated NMR data, and 10 of 19 (53%) molecules using experimental NMR data. The experimental structures solved have molecular weights of up to 480 Da and are representative of the complex structures in synthetic and natural products that routinely challenge chemists. The inverse-IMPRESSION framework thus provides the first effective approach for automated molecular structure elucidation using graph-based machine learning on experimental data.
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