构建首个针叶真菌病害显微图像检测数据集,助力精准诊断
NEEDL-Bench: Dataset for Swiss Needle Cast and Stomata Detection in Microscopy Images

- 构建3250张针叶显微图像数据集,标注伪囊壳与气孔关键点及边界框
- 最先进模型在该数据集上F1最高达0.8479,仍有提升空间
- 小目标、模糊、遮挡等挑战显著,适合研究领域专用模型
我们提出NEEDL-Bench,一个针对道格拉斯冷杉针叶真菌病——瑞士针叶腐烂(SNC)的显微图像检测基准。道格拉斯冷杉是重要生态与经济树种,其针叶受感染后会在气孔处形成伪囊壳,阻碍气体交换,影响光合作用。目前尚无自动计算机视觉检测该病害结构的数据集。为此,我们构建了包含3250张图像的数据库,来自1082根针叶,标注了伪囊壳和气孔的关键点与边界框。数据集涵盖模糊、对比度差、小目标和遮挡等复杂情况。为充分覆盖数据分布与罕见结构,我们设计两种评估划分:随机采样和序列采样以最大化结构多样性。我们在该数据集上测试多种主流关键点与边界框检测方法,得到最高F1分数为0.8479,表明未来改进空间巨大。同时发现,更大模型并未带来相同比例的性能提升,提示该问题的突破需依赖领域特定先验而非单纯模型扩展。
原文摘要 · Abstract (English)
We present NEEDL-Bench, a microscopy detection benchmark for Swiss Needle Cast (SNC), a fungal disease of Douglas-fir trees. Douglas-fir is a keystone species of major ecological and economic importance as a softwood timber resource, and SNC affects productivity by forming sexual reproductive structures (pseudothecia) that emerge through the gas exchange pores (stomata) of the needles, thereby blocking gas exchange and compromising needle function. To date, there is no dataset for automatic computer vision detection of these structures, despite computer vision being well poised to standardize and viably scale severity measurements. To address this, we present NEEDL-Bench, a dataset of 3250 annotated images from 1082 Douglas-fir needles, annotated for both keypoints and bounding-box detectors. This dataset exhibits a challenging collection of features, including blur, poor object contrast, small objects of interest, and occlusions. To better capture both the nominal distribution of the data and the full breadth of rare structures, we present two distinct evaluation splits: either random sampling from the collected images or sequential sampling to maximize structural diversity. We evaluate multiple popular keypoint and bounding box methods for detection on this dataset as a baseline and observe a maximum F1 score of 0.8479, suggesting significant potential for gains from future development on this problem. Further, we find that larger models generally do not show commensurate gains in performance on this dataset, indicating that improvements on this problem will not come from scaling laws but rather from domain-specific inductive biases.
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