arXiv:2607.17782cs.CVcs.AI2026-07

用6万张脑部MRI训练通用模型,可跨任务精准分析脑影像。

BrainNext: A General-Purpose Self-Supervised Foundation Model for Brain MRI Analysis

  • 基于三维Bi-Directional xLSTM-UNet架构,用掩码自编码器预训练。
  • 在脑肿瘤分割任务中排名第一,多任务综合排名第二。
  • 适合医疗影像研究者、临床医生做模型迁移与快速开发。

自监督学习的基底模型已改变计算机视觉,但现有神经影像基底模型受限于任务特异性训练、切片级学习策略或较小的预训练数据集,难以泛化至多样化脑部MRI应用。本文提出BrainNext,一种面向体积分层脑部MRI分析的通用自监督基底模型。BrainNext结合掩码自编码器(MAE)预训练与原生三维双向xLSTM-UNet架构,从涵盖多种磁共振模态的60,551例未标注脑部MRI检查中学习丰富的解剖表征。预训练模型通过轻量级任务特定微调适配下游任务。在2025年医学影像基底模型(FOMO)方法赛道中,其在分类、分割和脑龄估计任务上取得综合第二名,且在脑膜瘤分割任务中位列官方排行榜第一,展现出强大的跨异构神经影像任务迁移能力。结果表明,大规模自监督预训练能学习稳健且可迁移的体积分层表征,确立BrainNext作为多样化脑部MRI应用的可扩展基底模型。

原文摘要 · Abstract (English)

Foundation models pretrained using self-supervised learning have transformed computer vision by learning transferable representations from large-scale unlabeled data. However, existing foundation models for neuroimaging remain limited by task-specific training, slice-based learning strategies, or relatively small pretraining datasets, restricting their generalizability across diverse brain MRI applications. In this work, we present BrainNext, a general-purpose self-supervised foundation model for volumetric brain MRI analysis. BrainNext combines masked autoencoder (MAE) pretraining with a native three-dimensional Bi-Directional xLSTM-UNet architecture to learn rich anatomical representations from 60,551 unlabeled brain MRI examinations spanning multiple MRI modalities. The pretrained model is subsequently adapted to downstream tasks through lightweight task-specific fine-tuning. We evaluate BrainNext on the Foundation Models for Medical Imaging (FOMO) 2025 Method Track, encompassing classification, segmentation, and brain-age estimation, where it achieved second place overall and ranked first in the meningioma segmentation task on the official FOMO 2025 challenge leaderboard, demonstrating strong transferability across heterogeneous neuroimaging tasks. These results highlight the potential of large-scale self-supervised pretraining to learn robust and transferable volumetric representations, establishing BrainNext as a scalable foundation model for diverse brain MRI applications.

脑影像自监督基础模型MRI分析

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