用污水病毒载量提升疫情预警准确率,尤其在疫情初期更有效。
EpiFlow: A framework for improving the utility of wastewater signals for disease forecasting

- 构建时变模型融合污水数据与医疗指标的动态关系
- 污水信号使新冠住院预测准确率提升20个百分点
- 适合公共卫生部门做疫情实时监测与预警
污水基监测是疾病监控的有效工具,可提供疫情暴发的早期预警。尽管污水病毒载量(WVL)与疾病负担相关,但其在实时预测中的作用仍待深入研究。在疫情早期阶段,多种指标可用于传播监测,但因报告疲劳和低流行率,其可靠性可能下降。即使在低流行期,医院负担也可能大幅波动,因此准确预测负担指标对减轻疾病影响至关重要。本文提出系统性方法处理污水数据,分析其与负担指标的关系,并生成实时预测。我们使用熵度量评估WVL的可预测性,通过捕捉时间动态的因果检验分析WVL的领先指标特性。将这些发现融入时变预测模型,以反映信号间关系的演变。同时通过模拟评估报告延迟的影响。在弗吉尼亚州及各卫生区域测试方法,用于预测新冠住院人数。结果表明,引入WVL显著提升预测精度,尤其在关键疫情阶段,预测覆盖范围提高20个百分点。研究证实,即便在低流行或报告延迟条件下,WVL信号仍可有效提升传染病预测能力。
原文摘要 · Abstract (English)
Wastewater-based surveillance is an effective tool for disease monitoring and can provide early warning of outbreaks. Although wastewater viral loads (WVL) correlate with disease burden, their utility for improving real-time forecasting remains under investigation. During the early phases of an epidemic, many indicators can effectively monitor disease spread, but their reliability may decline because of reporting fatigue and low prevalence. Hospital burden can vary substantially even during low-prevalence periods, making accurate forecasting of burden indicators essential for minimizing disease impacts. In this paper, we present principled approaches for processing wastewater data, characterizing its relationship with burden indicators, and generating real-time forecasts. We assess the predictability of WVL using entropy measures. We analyze the relationship between WVL and burden indicators using causality tests that capture temporal dynamics and the leading-indicator behavior of WVL. We incorporate these insights into a time-varying forecasting model that accounts for the evolving relationship between the signals. We also evaluate the effects of delays in WVL reporting through simulations. We test the utility of our methods by forecasting COVID-19 hospital admissions across Virginia and its health regions during periods of varying disease prevalence. Incorporating WVL improves forecast accuracy relative to baseline models, particularly during critical epidemic phases, and results in a 20 percentage point improvement in forecast coverage. Our results demonstrate that WVL signals can improve infectious disease forecasting even under conditions of low prevalence or delayed reporting.
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