针对小样本生物组学数据,提出自适应特征选择方法ARISE,提升分类稳定性与准确性。
ARISE: An adaptive residual-informed stability ensemble for feature selection in small-sample biomedical omics

- 融合多维度相关性信号,通过嵌套交叉验证自适应加权
- 在21万次评估中15项指标均排名第一,性能优于最强对比方法
- 适合小样本生物医学特征选择,尤其适用于多分类场景
小样本分子分类需要能识别预测性强、稳定且无冗余的特征子集,用于二分类和多分类任务。本文提出ARISE(自适应残差感知稳定性集成),整合互补的相关性信号、类别平衡的稳定性评估、残差驱动的冗余控制以及多分类成对覆盖机制。ARISE通过15种预定义配置组合七个百分位归一化相关性分量,并以嵌套内部交叉验证自适应加权。在五个分子数据集、八种特征集大小、三种固定分类器(k近邻、支持向量机、随机森林)及六种过滤器比较器上进行评估。泛化性能通过五折外部交叉验证重复50次估计,采用平衡准确率、宏平均F1和Cohen's kappa作为指标。在21万次保留测试中,ARISE在所有15个数据集-指标组合中排名第一。各数据集平均值分别为:平衡准确率0.793,宏平均F1为0.776,Cohen's kappa为0.725,分别优于最强聚合对比方法0.022、0.023和0.028。即使在紧凑特征集下性能依然强劲,但最优特征预算因数据集而异。结论表明,ARISE提供了一个透明且自适应的框架,协同解决相关性、稳定性、冗余性和多分类判别问题。其在不同数据集、分类器、指标和特征集大小下的稳定表现,支持进一步评估其在小样本分子分类中的应用价值。
原文摘要 · Abstract (English)
Objective: Small-sample molecular classification requires feature selectors that identify predictive, stable, and nonredundant subsets for binary and multiclass outcomes. We propose ARISE (Adaptive Residual-Informed Stability Ensemble), which integrates complementary relevance signals, class-balanced stability assessment, residual-informed redundancy control, and multiclass pairwise coverage. Methods: ARISE combines seven percentile-normalized relevance components through 15 predefined profiles, adaptively weighted by nested inner cross-validation. It was evaluated on five molecular datasets, eight feature-set sizes, three fixed classifiers (k-nearest neighbours, support vector machine, and random forest), and six filter comparators. Generalization was estimated by five-fold outer cross-validation repeated 50 times using balanced accuracy, macro-F1, and Cohen's kappa. Results: Across 210,000 held-out assessments, ARISE ranked first in all 15 dataset-metric combinations. Equal-dataset means were 0.793 for balanced accuracy, 0.776 for macro-F1, and 0.725 for kappa, exceeding the strongest aggregate comparator by 0.022, 0.023, and 0.028, respectively. Performance remained strong across compact feature sets, although the optimal budget differed by dataset. Conclusion: ARISE provides a transparent, adaptive framework that jointly addresses relevance, stability, redundancy, and multiclass discrimination. Its consistent results across datasets, classifiers, metrics, and feature-set sizes support further evaluation for small-sample molecular classification.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。