arXiv:2608.27675cs.AI2026-08

通过云平台和实训工作坊,让生物知识库协作者轻松用上智能代理。

Agents for Everyone: A Workshop Framework for Building Agentic AI Capabilities in a Distributed Curation Community

  • 基于JupyterHub与Claude Code搭建云端代理环境,浏览器直连使用。
  • 37名参与者完成4小时培训,逐步掌握从工具使用到通路注释的全流程。
  • 降低技术门槛、渐进式教学、结合实际任务是推广代理能力的关键。

智能代理有望加速生物数据库与知识库的注释工作,但其应用受限于访问难、培训不足等问题。本文介绍通过部署基于JupyterHub的云端代理环境,并为基因本体联盟(Gene Ontology Consortium)设计互动式培训工作坊来应对这些挑战。该环境以Claude Code为通用接口,支持用户通过浏览器终端直接交互,实现集中化访问与统一API网关,无需本地安装或订阅。工作坊包含四个模块,从基础工具使用逐步过渡到利用现有GO-CAM(GO Causal Activity Model)工具进行生物通路注释。共有37名参与者完成了四小时培训。核心发现是:在分布式科学社区中构建智能代理能力,关键在于消除技术障碍、优化工作流设计并提供系统性培训。通过渐进式教学、结合熟悉任务、让注释员直接评估代理输出,可有效建立共享的智能代理协作能力。

原文摘要 · Abstract (English)

Agentic AI has the potential to accelerate curation of biological databases and knowledge bases. However, uptake has been hindered by a number of challenges and obstacles, including access to agents and appropriate training. Here we describe how we have attempted to address and mitigate these challenges and obstacles through the deployment of a cloud-based agentic environment, and the development of an interactive training workshop for the Gene Ontology Consortium. Our cloud environment for agentic-assisted curation was based on the JupyterHub platform, and utilized Claude Code as a universal harness. This allows curators to interact with an agent session through a terminal running in the browser, and has additional benefits such as centralization of access through a single API gateway, removing the need for participants to manage subscriptions or install software locally. We created four training modules, walking participants through basic agentic tool use first and then working up to agentic biological pathway curation using the existing GO-CAM (GO Causal Activity Model) curation tool. Thirty-seven participants took part in the four-hour workshop. Our key takeaway from this workshop is that building community capability with agentic AI is primarily a problem of access, workflow design, and training. Removing technical barriers, introducing capabilities gradually, grounding exercises in familiar curation tasks, and giving curators direct experience evaluating agent output can provide a practical route toward building shared agentic AI capability in distributed scientific communities.

智能代理生物信息协作注释云平台

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