arXiv:2609.01921cs.CV2026-09被引 1

用3D重建自动测量玉米穗的籽粒性状,精度高且可批量处理。

Automated Maize Ear Phenotyping Using 3D Reconstructions

论文配图:Automated Maize Ear Phenotyping Using 3D Reconstructions
图 1 · 摘自论文原文
  • 通过视频生成点云,结合分割与展开技术提取籽粒信息
  • 籽粒数量预测相关系数达0.921,行数误差小于2行的比例超95%
  • 适合育种研究中大规模表型数据采集与基因关联分析

玉米籽粒性状如行数、每行籽粒数和籽粒大小受遗传影响显著,且与产量相关基因区域一致。但人工测量难以应对育种中产生的大量玉米样本。为此,我们开发并验证了一套完全自动化的管道,从玉米穗的3D点云中提取这些性状,基于新近的视频到点云平台构建。原始视频帧经COLMAP和NeRF处理,通过密度分离定位玉米穗,点云进行距离校准至物理单位。校准后的点云通过PCA沿Z轴对齐,并柱面展开为2D图像。增强对比度后,使用无需微调的Cellpose-SAM进行实例分割。采用三重拼接展开策略避免接缝处重复计数。在包含168个穗的独立测试集上,籽粒数量预测的R²达0.921(MAPE=10.33%),行数误差在±2行内的比例为95.2%(MAE=0.75行)。所得多性状数据集每个穗具有明确基因型信息,适用于表型-基因型关联分析。

原文摘要 · Abstract (English)

Maize kernel traits such as row number, kernels per row, and kernel size vary largely for genetic reasons and are consistently associated with regions of the genome that influence yield. Manual measurement of these traits, however, cannot keep pace with the volume of maize generated in a breeding program. To address this, we developed and validated a fully automated pipeline for extracting these traits from 3D point clouds of corn ears, built on a recently developed video-to-point-cloud platform. Raw video frames are processed through COLMAP and NeRF, the ear is isolated via density-based separation, and the point cloud is distance-calibrated to physical units. The calibrated ear point cloud was Z-axis aligned via PCA and cylindrically unwrapped to a 2D image. We enhanced contrast and performed zero-fine-tuning instance segmentation using Cellpose-SAM. A triple-juxtaposed unwrap strategy was used to prevent double-counting at the seam. The pipeline achieved kernel count R^2 = 0.921 (MAPE = 10.33%) and kernel row number within +-2 rows for 95.2% of ears (MAE = 0.75 rows) on a 168-ear held-out set from the 268-ear labeled dataset. The resulting multi-trait dataset has known genotype identity for each ear, positioning it for phenotype-to-genotype association analyses.

玉米育种3D重建自动化表型点云分析

Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。