arXiv:2609.05323cs.CV2026-09

自动化检测化石孢子,单张切片分析从数天缩短至一小时。

Scalable Detection of Fossil Palynomorphs in Multifocal Digital Microscopy Images

论文配图:Scalable Detection of Fossil Palynomorphs in Multifocal Digital Microscopy Images
图 1 · 摘自论文原文
  • 将多焦点显微图像分解为可处理的二维图块,实现高效分析。
  • 使用RF-DETR模型检测孢子,平均精度达AP@50 0.879。
  • 适合需要大规模古生态研究的地质与气候学者使用。

孢子类化石(如花粉、孢子和甲藻类)是过去气候的高分辨率记录,对古代生态系统研究至关重要。现有方法依赖人工分析高分辨率多焦点数字显微图像,耗时且难以扩展。本文提出首个端到端可扩展的自动化孢子检测流程:(1)高效分解与压缩数字化多焦点显微切片为可分析的二维图块;(2)基准测试现代目标检测模型,包括RF-DETR,实现AP@50 0.879;(3)设计高效算法合成大规模高分辨率图像的检测结果;(4)通过输入输出优化显著提升推理速度。该方法将单张切片的孢子检测时间从数天的人工工作降至不到一小时的自动分析,极大拓展了孢粉学研究的规模。

原文摘要 · Abstract (English)

Palynomorphs (microscopic, organic-walled fossils such as pollen, spores, and dinoflagellates) are important high-resolution records of past climates and are critical to the study of ancient ecosystems. Existing methods rely on manual analysis of high-resolution, multifocal digital microscopy images, which is slow and time-consuming and requires researchers to compromise on the scale of their investigations. To the best of our knowledge, our work proposes the first ever scalable end-to-end pipeline for automated palynomorph detection in whole slide images that addresses this bottleneck through: (1) efficient methods for decomposing and compressing digitized multifocal microscope slide images into tractable 2-dimensional tiles for analysis; (2) benchmarking modern object detection models, including RF-DETR, for the detection of palynomorphs, achieving an AP@50 of 0.879; (3) an efficient algorithm for the synthesis of detection outputs across large-scale, high-resolution images; and (4) an I/O optimization resulting in faster inference time. Our methods drastically reduce the time required for palynomorph detection in a single slide from often days of manual inspection to under one hour of automated analysis, enabling palynological research at a substantially greater scale.

孢子检测显微图像自动化分析古气候

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