基于两百万小时睡眠数据,构建可迁移的生理健康模型。
Learning transferable human physiology from two million hours of sleep with SleepFM-2

- 用26个队列28万份多模态睡眠数据训练基础模型。
- 在215个临床表型上达到预设统计标准,155个超越基础人口信息。
- 适配可穿戴设备与主观睡眠报告,跨任务跨传感器迁移能力强。
睡眠通过记录大脑、心脏、肌肉和呼吸系统的协同活动,为健康提供每日窗口。我们提出SleepFM-2,一个基于26个队列282,511份多导睡眠图(PSG)记录的睡眠基础模型,其中235,865份用于预训练,总时长达两百万小时以上。相比SleepFM,SleepFM-2在疾病预测与睡眠分期上表现更优,支持觉醒、肢体运动及呼吸事件检测,并可迁移至可穿戴传感与主观睡眠表型。将模型生成的PSG表征结合年龄、性别和体重指数,在两个独立队列中成功满足215个后续电子病历(EHR)表型的预设区分度与显著性标准,其中一个医疗系统在预训练中未出现。对155个表型,其表征提供了可重复的额外信息。该模型优于480个特征基线。疾病评分揭示了一个与sigma波段空间耦合降低、睡眠密度熵升高的主成分相关联的可重复模式。冻结编码器在睡眠事件判读上达到专家水平,并成功迁移到清醒脑电、头戴/耳戴脑电、腕部光电容积脉搏波(PPG)与加速度计数据。在六个加速度计队列中提升睡眠分期性能,且在英国生物银行中的疾病预测表现媲美直接在加速度计数据上预训练的模型。此外,它捕捉了传统PSG总结无法还原的主观睡眠特征,尤其与记录当晚的自我报告高度相关。结果表明,多模态睡眠生理数据能提供跨疾病、临床任务、传感器与主观体验的可迁移人类健康表征。
原文摘要 · Abstract (English)
Sleep provides a nightly window into health by capturing coordinated activity across the brain, heart, muscles and respiratory system. We introduce SleepFM-2, a sleep foundation model developed and evaluated on 282,511 polysomnography recordings from 26 cohorts, including 235,865 used for pretraining. These data span more than two million hours of multimodal physiology. Compared with SleepFM, SleepFM-2 improves disease prediction and sleep scoring, supports arousal, limb movement and respiratory event detection, and transfers to wearable sensing and subjective sleep phenotypes. A model combining its PSG representation with age, sex and BMI met a prespecified discrimination and significance criterion for 215 subsequently recorded EHR phenotypes in two held-out cohorts, including one health system unseen during pretraining. For 155 phenotypes, the PSG representation added reproducible information beyond demographics. SleepFM-2 also outperformed a 480-feature baseline derived from the same recordings. Its disease scores revealed a reproducible principal component associated with reduced sigma-band spatial coupling and increased hypnodensity entropy. The frozen encoder performed within the observed range of expert scorers for sleep events and transferred to wakeful EEG, headband and in-ear EEG, wrist PPG and wrist accelerometry. It improved sleep staging across six accelerometry cohorts and achieved disease-prediction performance in UK Biobank similar to models pretrained directly on accelerometry. Finally, SleepFM-2 captured aspects of subjective sleep not recovered by conventional PSG summaries, particularly reports of the recorded night. These results show that multimodal sleep physiology can provide a transferable representation of human health across diseases, clinical tasks, sensors and subjective experience.
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